325 lines
12 KiB
TeX
325 lines
12 KiB
TeX
%%
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%% This is file `examples/hitbook/chinese/hithesis.sty',
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%% generated with the docstrip utility.
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%%
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%% The original source files were:
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%%
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%% hithesis.dtx (with options: `hithesis-style')
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%%
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%% This is a generated file.
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%%
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%% Copyright (C) 2017-2025 by Chu Yanshuo <yanshuoc@gmail.com>
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%%
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%% This file may be distributed and/or modified under the
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%% conditions of the LaTeX Project Public License, either version 1.3a
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%% of this license or (at your option) any later version.
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%% The latest version of this license is in:
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%%
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%% http://www.latex-project.org/lppl.txt
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%%
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%% and version 1.3a or later is part of all distributions of LaTeX
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%% version 2004/10/01 or later.
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%%
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%% To produce the documentation run the original source files ending with `.dtx'
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%% through LaTeX.
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%%
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\ProvidesPackage{hithesis}
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[0000/00/00 v3.1e Harbin Institute of Technology Thesis Template]
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\RequirePackage{xeCJKfntef}
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\RequirePackage{siunitx}
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\sisetup{group-minimum-digits=4, group-separator= \hspace{0.25em}}
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\sisetup{detect-weight,detect-mode,detect-family}
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\RequirePackage{bm}
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\RequirePackage{mathrsfs}
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\RequirePackage{xcolor}
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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\definecolor{colorzero}{rgb}{0, 0, 0}
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\definecolor{colorone}{rgb}{1, 0, 0}
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\definecolor{colortwo}{rgb}{0, 0, 1}
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\definecolor{colorthree}{rgb}{0, 1, 0}
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\RequirePackage{rotating}
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\RequirePackage[algoruled,linesnumbered,algochapter]{algorithm2e}
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\SetAlCapSty{}
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\newcommand{\foocaption}[1]{ \def\@algocf@pre@plainruled{\hrule height1.5pt depth0pt\kern\interspacetitleruled #1 \kern\interspacealgoruled\hrule height1pt depth0pt\kern\interspacetitleruled} }
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\def\@algocf@post@ruled{\kern\interspacealgoruled\hrule height1.5pt\relax}%
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\newcommand{\algoenname}{Algo.} %算法英文标题
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\newfloatlist[chapter]{algoen}{aen}{\listalgoenname}{\algoenname}
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\newfixedcaption{\algoencaption}{algoen}
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\renewcommand{\thealgoen}{\thechapter-\arabic{algocf}}
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\renewcommand{\@cftmakeaentitle}{\chapter*{\listalgoenname\@mkboth{\listalgoenname}{\listalgoenname}}
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}
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\renewcommand{\algorithmcfname}{算法}
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\setlength\AlCapSkip{1.2ex}
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\SetAlgoSkip{1pt}
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\renewcommand{\algocf@captiontext}[2]{\wuhao#1\algocf@typo~\AlCapFnt{}#2} % text of caption
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\expandafter\ifx\csname algocf@within\endcsname\relax% if \algocf@within doesn't exist
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\renewcommand\thealgocf{\@arabic\c@algocf} % and the way it is printed
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\else% else
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\renewcommand\thealgocf{\csname the\algocf@within\endcsname-\@arabic\c@algocf}
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\fi
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\renewcommand{\algocf@makecaption}[2]{%中英文双标题一定多于一行，因此去掉单行时的判断，并将\parbox中标题设置为居中
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\addtolength{\hsize}{\algomargin}%
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\sbox\@tempboxa{\algocf@captiontext{#1}{#2}}%
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\hskip .5\algomargin%
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\parbox[t]{\hsize}{\centering\algocf@captiontext{#1}{#2}}%
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\addtolength{\hsize}{-\algomargin}%
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}
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\newcommand{\AlgoBiCaption}[2]{%直接取出自定义的中英文标题条目加入到真正的\caption 中
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\caption[#1]{\protect\setlength{\baselineskip}{1.5em}#1 \protect \\ Algo.\thealgocf~#2} % \algoencaption{#2}
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\addcontentsline{aen}{algoen}{\protect\numberline{\thealgoen}{#2}}
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}
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\RequirePackage{listings}
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\lstset{
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columns=flexible,
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breaklines=true
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}
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\newacronym{etssbp}{TSSBP}{Tree-structured Stick-breaking process}
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\newacronym{etse}{TSE}{Taylor Series Expansion}
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\newacronym{esvm}{SVM}{Support Vector Machine}
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\newacronym{eml}{ML}{Machine Learning}
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\newacronym{eco}{CO}{Convex Optimization}
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\newacronym{tssbp}{树结构折筷过程}{树结构折筷过程（Tree-structured Stick-breaking process）}
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\def\gtssbp{\gls{tssbp}\sindex[china]{shu!树结构折筷过程}\sindex[english]{Tree-structured Stick-breaking process}}
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\newacronym[shortplural=SCNAs,longplural={体细胞拷贝数变异（Somatic copy number alternation，SCNA）}]{scna}{SCNA}{体细胞拷贝数变异（Somatic copy number alternation，SCNA）}
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\def\gscna{\gls{scna}\sindex[china]{ti!体细胞拷贝数变异}\sindex[english]{Somatic copy number alternation}\ignorespaces}
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\def\gscnas{\glspl{scna}\sindex[china]{ti!体细胞拷贝数变异}\sindex[english]{Somatic copy number alternation}\ignorespaces}
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\usepackage{tikz}
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\tikzstyle{maternal}= [colorone]
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\tikzstyle{paternal}= [colortwo]
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\tikzstyle{variant}= [colorthree!80!colorzero]
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\tikzstyle{reference}= [colorzero]
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\tikzstyle{aallele}= [colorzero,rotate=90]
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\tikzstyle{ballele}= [colorthree!80!colorzero,rotate=90]
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\tikzstyle{refseg}= [colorzero,draw=colorzero, opacity=0.2]
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\tikzstyle{mseg}= [colorone,draw=colorone, opacity=0.2]
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\tikzstyle{pseg}= [colortwo,draw=colortwo, opacity=0.2]
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\tikzstyle{vseg}= [colorthree!80!colorzero,draw=colorthree!80!colorzero, opacity=0.6]
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\tikzstyle{bncell}= [draw=colorzero,opacity=0.2,line width=2pt, rounded corners=1pt]
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\tikzstyle{btcell}= [draw=colorone,opacity=0.6, line width=2pt, rounded corners=1pt]
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\tikzstyle{tncell}= [colorzero,opacity=0.9]
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\tikzstyle{ttcell}= [colorone,opacity=0.6]
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\tikzstyle{tscell}= [colorzero]
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\tikzstyle{refcell}= [colorzero]
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\tikzstyle{evolve}= [->,draw=colortwo,opacity=0.3,line width=1.5pt]
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\tikzstyle{fakeevolve}= [->,draw=colorzero,opacity=0.3,line width=1.5pt]
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\tikzstyle{refline}= [dashed,draw=colorzero,line width=1pt]
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\tikzstyle{tnline}= [dashed,draw=colorzero,opacity=0.3,line width=1pt]
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\newcommand{\gseg}[9]{%
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\pgfmathsetmacro{\sstartx}{#1}
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\pgfmathsetmacro{\slengx}{#2}
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\pgfmathsetmacro{\sy}{#3}
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\pgfmathsetmacro{\sdy}{#4}
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\pgfmathsetmacro{\sdx}{#5}
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\pgfmathsetmacro{\sdxh}{#7}
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\pgfmathsetmacro{\sdxt}{#8}
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\fill[#6](\sstartx,\sy)--(\sstartx-\sdx,\sy+\sdy)--
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(\slengx+\sstartx+1.5-\sdx,\sy+\sdy)--(\slengx+\sstartx+1.5,\sy)--
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(\slengx+\sstartx+1.5-\sdx,\sy-\sdy)--(\sstartx-\sdx,\sy-\sdy)--cycle;
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\draw[#9] (\sstartx-\sdxh,\sy) -- (\sstartx, \sy);
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\draw[#9] (\slengx+\sstartx+1.5, \sy) -- (\slengx+\sstartx+1.5+\sdxt,\sy);
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}
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\newcommand{\gsegr}[9]{%
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\pgfmathsetmacro{\sstartx}{#1}
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\pgfmathsetmacro{\slengx}{#2}
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\pgfmathsetmacro{\sy}{#3}
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\pgfmathsetmacro{\sdy}{#4}
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\pgfmathsetmacro{\sdx}{#5}
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\pgfmathsetmacro{\sdxh}{#7}
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\pgfmathsetmacro{\sdxt}{#8}
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\fill[#6](\sstartx-0.5,\sy)--(\sstartx+\sdx-0.5,\sy+\sdy)--
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(\slengx+\sstartx+1.5+\sdx-0.5,\sy+\sdy)--(\slengx+\sstartx+1.5-0.5,\sy)--
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(\slengx+\sstartx+1.5+\sdx-0.5,\sy-\sdy)--(\sstartx+\sdx-0.5,\sy-\sdy)--cycle;
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\draw[#9] (\sstartx-\sdxh-0.5,\sy) -- (\sstartx-0.5, \sy);
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\draw[#9] (\slengx+\sstartx+1.5-0.5, \sy) -- (\slengx+\sstartx+1.5+\sdxt-0.5,\sy);
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}
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\newcommand{\rcell}[2]{%
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\pgfmathsetmacro{\x}{#1}
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\pgfmathsetmacro{\y}{#2}
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%\node at (\x+10, \y) {Reference};
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\draw (\x+1,\y) node[aallele]{A};
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\draw (\x+2,\y) node[aallele]{C};
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\draw (\x+3,\y) node[aallele]{T};
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\draw (\x+4,\y) node[aallele]{C};
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\gseg{\x}{4}{\y}{0.2}{0.5}{refseg}{1.5}{1}{reference};
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}
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\newcommand{\ncell}[2]{%
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\pgfmathsetmacro{\x}{#1}
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\pgfmathsetmacro{\y}{#2}
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%\node [maternal] at (\x+8, \y) {M};
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%\node [paternal] at (\x+8, \y-0.5) {P};
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\draw[bncell](\x-2,\y+0.5)--(\x+7,\y+0.5)--
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(\x+7,\y-1)--(\x-2,\y-1)--cycle;
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\draw (\x+1,\y) node[aallele]{A};
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\draw (\x+2,\y) node[ballele]{G};
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\draw (\x+3,\y) node[aallele]{T};
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\draw (\x+4,\y) node[aallele]{C};
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\gseg{\x}{4}{\y}{0.2}{0.5}{mseg}{1.5}{1}{maternal};
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\draw (\x+1,\y-0.5) node[ballele]{T};
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\draw (\x+2,\y-0.5) node[aallele]{C};
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\draw (\x+3,\y-0.5) node[aallele]{T};
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\draw (\x+4,\y-0.5) node[ballele]{A};
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\gseg{\x}{4}{\y-0.5}{0.2}{0.5}{pseg}{1.5}{1}{paternal};
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}
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\newcommand{\tcellone}[2]{%
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\pgfmathsetmacro{\x}{#1}
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\pgfmathsetmacro{\y}{#2}
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%\node [maternal] at (\x+8, \y) {M};
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%\node [maternal] at (\x+8, \y-0.5) {M};
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%\node [paternal] at (\x+8, \y-1) {P};
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\draw[btcell](\x-2,\y+0.5)--(\x+7,\y+0.5)--
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(\x+7,\y-1.5)--(\x-2,\y-1.5)--cycle;
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\draw (\x+1,\y) node[aallele]{A};
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\draw (\x+2,\y) node[ballele]{G};
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\draw (\x+3,\y) node[aallele]{T};
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\draw (\x+4,\y) node[aallele]{C};
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\gseg{\x}{4}{\y}{0.2}{0.5}{mseg}{1.5}{1}{maternal};
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\draw (\x+1,\y-0.5) node[aallele]{A};
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\draw (\x+2,\y-0.5) node[ballele]{G};
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\draw (\x+3,\y-0.5) node[aallele]{T};
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\draw (\x+4,\y-0.5) node[aallele]{C};
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\gseg{\x}{4}{\y-0.5}{0.2}{0.5}{mseg}{1.5}{1}{maternal};
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\draw (\x+1,\y-1) node[ballele]{T};
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\draw (\x+2,\y-1) node[aallele]{C};
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\draw (\x+3,\y-1) node[aallele]{T};
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\draw (\x+4,\y-1) node[ballele]{A};
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\gseg{\x}{4}{\y-1}{0.2}{0.5}{pseg}{1.5}{1}{paternal};
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}
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\newcommand{\tcellthree}[2]{%
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\pgfmathsetmacro{\x}{#1}
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\pgfmathsetmacro{\y}{#2}
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%\node [maternal] at (\x+12, \y) {M};
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%\node [paternal] at (\x+12, \y-0.5) {P};
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\draw[btcell](\x-2,\y+0.5)--(\x+11,\y+0.5)--
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(\x+11,\y-1)--(\x-2,\y-1)--cycle;
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\draw (\x+1,\y) node[aallele]{A};
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\draw (\x+2,\y) node[ballele]{G};
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\gseg{\x}{2}{\y}{0.2}{0.5}{mseg}{1.5}{0}{maternal};
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\gseg{\x+4}{0}{\y}{0.2}{0.5}{vseg}{0.5}{0.5}{variant};
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\draw (\x+7,\y) node[aallele]{T};
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\draw (\x+8,\y) node[aallele]{C};
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\gseg{\x+6}{2}{\y}{0.2}{0.5}{mseg}{0}{1}{maternal};
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\draw (\x+1,\y-0.5) node[ballele]{T};
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\draw (\x+2,\y-0.5) node[aallele]{C};
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\draw (\x+3,\y-0.5) node[aallele]{T};
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\draw (\x+4,\y-0.5) node[ballele]{A};
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\gseg{\x}{4}{\y-0.5}{0.2}{0.5}{pseg}{1.5}{1}{paternal};
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}
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\newcommand{\tcellfour}[2]{%
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\pgfmathsetmacro{\x}{#1}
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\pgfmathsetmacro{\y}{#2}
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%\node [maternal] at (\x+18, \y) {M};
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%\node [paternal] at (\x+18, \y-0.5) {P};
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\draw[btcell](\x-2,\y+0.5)--(\x+15,\y+0.5)--
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(\x+15,\y-1)--(\x-2,\y-1)--cycle;
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\draw (\x+1,\y) node[aallele]{A};
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\draw (\x+2,\y) node[ballele]{G};
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\gseg{\x}{2}{\y}{0.2}{0.5}{mseg}{1.5}{0}{maternal};
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\gseg{\x+4}{0}{\y}{0.2}{0.5}{vseg}{0.5}{0.5}{variant};
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\draw (\x+7,\y) node[aallele]{T};
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\gseg{\x+6}{1}{\y}{0.2}{0.5}{mseg}{0}{0}{maternal};
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\gseg{\x+9}{0}{\y}{0.2}{0.5}{vseg}{0.5}{0.5}{variant};
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\draw (\x+12,\y) node[aallele]{C};
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\gseg{\x+11}{1}{\y}{0.2}{0.5}{mseg}{0}{1}{maternal};
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\draw (\x+1,\y-0.5) node[ballele]{T};
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\draw (\x+2,\y-0.5) node[aallele]{C};
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\draw (\x+3,\y-0.5) node[aallele]{T};
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\draw (\x+4,\y-0.5) node[ballele]{A};
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\gseg{\x}{4}{\y-0.5}{0.2}{0.5}{pseg}{1.5}{1}{paternal};
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}
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\newcommand{\tcelltwo}[2]{%
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\pgfmathsetmacro{\x}{#1}
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\pgfmathsetmacro{\y}{#2}
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%\node [maternal] at (\x+8, \y) {M};
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%\node [maternal] at (\x+8, \y-0.5) {M};
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%\node [paternal] at (\x+8, \y-1) {P};
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\draw[btcell](\x-2,\y+0.5)--(\x+7,\y+0.5)--
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(\x+7,\y-1.5)--(\x-2,\y-1.5)--cycle;
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\draw (\x+1,\y) node[aallele]{A};
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\draw (\x+2,\y) node[ballele]{G};
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\draw (\x+3,\y) node[aallele]{T};
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\draw (\x+4,\y) node[aallele]{C};
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\gseg{\x}{4}{\y}{0.2}{0.5}{mseg}{1.5}{1}{maternal};
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\draw (\x+1,\y-0.5) node[aallele]{A};
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\draw (\x+2,\y-0.5) node[ballele]{G};
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\draw (\x+3,\y-0.5) node[aallele]{T};
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\draw (\x+4,\y-0.5) node[ballele]{G};
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\gseg{\x}{4}{\y-0.5}{0.2}{0.5}{mseg}{1.5}{1}{maternal};
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\draw (\x+1,\y-1) node[ballele]{T};
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\draw (\x+2,\y-1) node[aallele]{C};
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\draw (\x+3,\y-1) node[aallele]{T};
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\draw (\x+4,\y-1) node[ballele]{A};
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\gseg{\x}{4}{\y-1}{0.2}{0.5}{pseg}{1.5}{1}{paternal};
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}
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\newcommand{\tcellfive}[2]{%
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\pgfmathsetmacro{\x}{#1}
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\pgfmathsetmacro{\y}{#2}
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%\node [maternal] at (\x+8, \y) {M};
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%\node [maternal] at (\x+8, \y-0.5) {M};
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%\node [paternal] at (\x+8, \y-1) {P};
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\draw[btcell](\x-2,\y+0.5)--(\x+9.5,\y+0.5)--
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(\x+9.5,\y-1.5)--(\x-2,\y-1.5)--cycle;
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\draw (\x+1,\y) node[aallele]{A};
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\draw (\x+2,\y) node[ballele]{G};
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\draw (\x+3,\y) node[aallele]{T};
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\draw (\x+4,\y) node[aallele]{C};
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\gseg{\x}{4}{\y}{0.2}{0.5}{mseg}{1.5}{1}{maternal};
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\draw (\x+1,\y-0.5) node[aallele]{A};
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\draw (\x+2,\y-0.5) node[ballele]{G};
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\draw (\x+3,\y-0.5) node[aallele]{T};
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\draw (\x+4,\y-0.5) node[aallele]{C};
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\gseg{\x}{4}{\y-0.5}{0.2}{0.5}{mseg}{1.5}{1}{maternal};
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\draw (\x+1,\y-1) node[ballele]{T};
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\gseg{\x}{1}{\y-1}{0.2}{0.5}{pseg}{1.5}{0}{paternal};
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\draw (\x+4.5,\y-1) node[ballele]{A};
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\draw (\x+5.5,\y-1) node[aallele]{T};
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\draw (\x+6.5,\y-1) node[aallele]{C};
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\gsegr{\x+3.5}{3}{\y-1}{0.2}{0.5}{pseg}{0.5}{1.5}{paternal};
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}
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\newcommand{\theVector}[1]{\bm{#1}}
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\newcommand{\theMatrix}[1]{\mathbb{#1}}
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\newcommand{\theSet}[1]{\mathcal{#1}}
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\newcommand{\theDirected}[1]{{\overrightarrow{#1}}}
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\newcommand{\theUndirected}[1]{{\overline{#1}}}
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\newcommand{\theNetwork}[1]{\mathscr{#1}}
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\newcommand{\theNode}[1]{{\text{#1}}}
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\newcommand{\theDirectedEdge}[2]{{\overrightarrow{{#1}{#2}}}}
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\newcommand{\theUndirectedEdge}[2]{{\overline{{#1}{#2}}}}
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\def\cmd#1{\cs{\expandafter\cmd@to@cs\string#1}}
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\def\cmd@to@cs#1#2{\char\number`#2\relax}
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\DeclareRobustCommand\cs[1]{\texttt{\char`\\#1}}
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\endinput
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%%
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%% End of file `examples/hitbook/chinese/hithesis.sty'.
|